Cytoscape
Cytoscape can be downloaded in binaries or source.
Source SVN release
building with ant
- get a working version of ant
- check-out cytoscape:
svn checkout http://chianti.ucsd.edu/svn/cytoscape/trunk cytoscape
- run cytoscape:
cd cytoscape ant run
building with maven
svn checkout http://chianti.ucsd.edu/svn/cytoscape3/trunk cytoscape mvn clean install mvn -Dmaven.test.skip install
building with maven in Eclipse
see page Eclipse for Java