Lab Meetings (2006)
15 December 06: Vijaya Parthiban, (postdoc candidate, replaces Journal Club)
12 December 06: Runxuan (MS pipeline) absent: Benno (NIH)
5 December 06: Laura Elo (Tero's student from Turku) on gene expression data integration (PubMed)
absent:
28 November 06 Tero (GOlorize algorithm)
absent:
24 November 06 Matthieu Jules (PubMed) (Last focus topic talk) Mathieu is going to talk about the reconstruction of bacterial metabolism in Listeria
absent: Benno (move)
17 November 06 Pascal: Experimental design papers in /home/Papers.
absent: Andrea (leaving for workshop)
10 November 06 Runxuan: Measuring metabolites and fluxes
absent: Andrea (interview), Benno (BaSysBio meeting in Basel)
3 November 06 (CANCELLED) Melissa: Drawing metabolic networks
absent: Andrea (interview), Benno (vacation)
27 October 06 Andrea: Databases, ontologies, and stuff
absent: Benno (vacation) postponed by the speaker
24 October 06 (11.30am) Johannes Tuikkala (Tero's Ph.D. student from Turku) will talk about his work on missing values in microarrays, and dealing with their effects on cluster analysis etc.
20 October 06 Mathias: Network evolution absent:Runxuan (Proteomics course in Seattle)
19 October 06, 11am Jin Chen (Natl. U. Singapore): tba
absent: Runxuan (Proteomics course in Seattle)
6 October 06, 9.30am Alan Aderem (Institute for Systems Biology, Seatle)
absent:
29 September 06 Sébastien: Mathematical modeling, part II
absent:
22 September 06 Tero: Mathematical modeling, part I
absent:
14 September 06 Mathias: Biochemical background
absent:
What about session II on tuesday 19 Sept 2006?]
27 July 06 (Last meeting before the August break): Discussion on mode and topics of next year's group and journal meetings
20 July 06:Melissa's practice talk for her alt-splicing presentaiton at ISMB 2006 absent:
13 July 06: Pascal: Progress report
absent people:
06 July 06: Olivier
absent:
30 June 06 (11am): Michael Sammeth
absent people:
(Preliminary): Alternative splicing: Data and Models.
29 June 06: Runxuan
absent people:
Very interesting papers on spectra alignment for peptide and post-translational modification identifications.
''Shotgun protein sequencing by tandem mass spectra assembly'',
22 June 06:Special seminar by Kimmen Sjolander, no additional meeting
absent people: Andrea (workshop)
15 June 06: Jens Stoye (visitor to the lab in June)
absent people:
08 June 06: Olivier absent people: [Benno: This is Day 2 of the Departmental retreat. Should we reschedule this talk to June 6?]
01 June 06: Tero absent: Runxuan, Sebastien, Benno I will present something related to analyzing gene or protein expression data in conjunction with interaction networks, with a special focus on the recent paper http://www.mcponline.org/cgi/content/full/4/5/683
18 May 06: Sebastien absent people: Tero (SysBio seminar in Finland), Benno (meeting with Direction), Melissa
11 May 06: Melissa absent people: Tero I will review http://www.pnas.org/cgi/reprint/100/21/12123, which I've never actually read but it appears to be a classic article in network analysis. If time permits, I'll augment it with some follow-up material.
04 May 06: Benno Epistasis analysis with global transcriptional phenotypes. This paper establishes a connection between large-scale microarray data and genetic interactions -- two important types of data available in one of our projects. The connection could be the basis for the integration of these two (and other) types of data.
absent people:
27 April 06: Tero
absent people: Andrea (most likely)
20 April 06: Andrea
absent people: Benno (vacation) Andrea (thesis)
14 April 06 (11am): Aurelien Mazurie Aurelien will present his paper
''An evolutionary and functional assessment of regulatory network motifs''
absent people: Tero
13 April 06 (11am): Marion Leleu Title t.b.a.
Marion's CV (as of a little while ago, she now works in the UK)
13 April 06 (afternoon): Melissa I welcome special guest Lloyd Demetrius from the Max Planck Institute for Molecular Genetics and Harvard (see http://www.molgen.mpg.de/~demetriu/). Dr. Demetrius will pay us a visit while he is in town, wishes to get a sense of our work, and will hopefully tell us about his work on metabolism, network stability, and aging. In the remaining time, I will present an overview of my work on alternative splicing.
absent people: Tero
11 April 06 (11am): Mathias Vandenbogaert Statistical characterization of oligonucleotides in genomic sequences by means of a word-algorithmic approach, with applications
10 April 06 (11.15am): Emeric Maschino Emeric will present his work on Fusion of three-dimensional neuroanatomical models
06 April 06: Runxuan absent people: Andrea I plan to give a brief review on Systems Biology Reference papers:
30 March 06: Andrea (Group Meeting)
absent people: Benno (Workshop)
23 March 06: Sebastien I plan to present a paper from RECOMB2005 titled "PepHMM: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search" pdf file
absent people: Melissa
16 March 06: Benno (Group Meeting) absent people: Topic: A paper that summarizes work with Amol over the last few years on integrating mass spec data from multiple LC-MS experiments PubMed
09 March 06: [[Overview]]
absent people: Benno (DREAMS meeting NYC)
02 March 06: Lab meeting Features of the present wiki : http://wiki.lri.fr:8000/wiki/wiki.wiki
Accessing the web via the Washington University Library