When

What

Milestone question

Jul 2007 (Month 9)

ML3.1.1 - First implementations of algorithms for constrained non-negative matrix factorization, and graph-based subsystem identification.

Jul 2007 (Month 9)

ML3.1.2 - A first implementation of a multiple alignment tool for LC-MS experiments.

Sep 2007 (Month 11)

D3.1.1 - A software tool to align multiple LC-MS experiments relative to each other, with a validation study.

Dec 2007 (Month 14)

(INRA) D3.1.2 - Global lists of known system components in B. subtilis, with statistically derived probabilities.

Mar 2008 (Month 17)

D3.1.3 - A software tool for subsystem identification.

Apr 2008 (Month 18)

ML3.1.3 - Validation studies for the subsystem identification algorithms in B. subtilis, and welldocumented software implementations.

Apr 2008 (Month 18)

ML3.1.4 - Validation studies for LC alignment approach on proteomic data, and a well-documented software tool.

??? 2007 (Month ??)

(INRA) ML3.1.5 - A global catalog of known system components in B. subtilis